Molecular assessment of potato varieties resistance to Phytophthora infestans in the Dominican Republic

Authors

  • Rosa Atharva V. Instituto de Innovación en Biotecnología e Industria (IIBI), P.O. Box 329-2, Santo Domingo. Rep. Dominicana
  • Iris Pérez-Almeida Facultad de Ingenierías, Universidad Ecotec, km. 13,5 vía Samborondón, Guayas, Ecuador.
  • Julio Mejía Instituto de Innovación en Biotecnología e Industria (IIBI), P.O. Box 329-2, Santo Domingo. Rep. Dominicana.
  • Guarina Delmonte Instituto de Innovación en Biotecnología e Industria (IIBI), P.O. Box 329-2, Santo Domingo. Rep. Dominicana.
  • Ineko Hodai Instituto de Innovación en Biotecnología e Industria (IIBI), P.O. Box 329-2, Santo Domingo. Rep. Dominicana.

Keywords:

Genetic improvement, late blight, molecular markers, PCR, Solanum tuberosum

Abstract

The identification of agronomical interesting genes is facilitated by the use of molecular markers linked to them that allow the selection of genotypes with the traits of interest. With the aim to identify potato materials (Solanum tuberosum) with late blight (Phytophthora infestans) resistance genes, five combinations of SCAR (sequence characterized amplified region) molecular marker primers were used. Tuber samples were collected from 12 farms of Constanza county, 3 of San José de Ocoa and seven varieties available at commercial stores. From these tubers, 116 in vitro plantlets were established, taking leave samples for DNA isolation. The DNA was amplified by PCR and visualized using electrophoresis on 2% agarose gels. The gels were digitalized and later analyzed by the presence and absence of amplicons, as well as comparing the observed versus the expected size of the bands. Polymorphic and monomorphic fragments were obtained for the total of cultivars in each studied marker; which corresponded to alleles related to the resistance to P. infestans. Marker GP179 yielded a monomorphic fragment of 570 bp. For PrP1 the resulting alleles showed some relationship with the studied varieties. R1, a characteristic fragment of the R1 resistance gene, was found only in the CPC336 (positive check), whereas CosA was present in a Granola variety sample and in CPC336. This is the first report of using this type of markers for detection of disease resistance that is indicated in the Dominican Republic.

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References

1. Álvarez-Yepes, D., P. Gutiérrez-Sánchez y M. Marín-Montoya. 2017. Secuenciación del genoma del potato yellow vein virus (pyvv) y desarrollo de una prueba molecular para su detección. Bioagro 29(1): 3-14.
2. Arens, P., C. Mansilla, D. Deinum, L. Cavellini, A. Moretti, S. Rolland et al. 2010. Development and evaluation of robust molecular markers linked to disease resistance in tomato for distinctness, uniformity and stability testing. Theor. Appl. Genet. 120: 655-664.
3. Ballesteros, D., G. Gómez, M. Delgado, M. Álvarez, D. Juyó, D. Cuellar y T. Mosquera. 2010. Posible presencia de un gen R1 en germoplasma de Solanum tuberosum Grupo Phureja. Agron. Col. 28: 137-146.
4. Bartfort, E. 2013. Crop pests advancing with global warming. Nature. doi:10.1038/nature. 2013.13644.
5. Beketova, M., Drobyazina P. y E. Khavkin. 2006. The R1 gene for late blight resistance in early and late maturing potato cultivars. Russian Journal of Plant Physiology 53: 384-389.
6. Bonierbale, M., W. Amoros, J. Espinoza, E. Mihovilovich, W. Roca y R. Gómez. 2004. Recursos genéticos de la papa: don del pasado, legado para el futuro. Suplemento Revista Latinoamericana de la Papa. pp. 3-14.
7. CIAT. 1995. Protocolos para marcadores moleculares. Unidad de Biotecnología, Publicación N° 258. Centro Internacional de Agricultura Tropical. Cali, Colombia. 82 p.
8. Dellaporta, S., J. Wood y J. Hick. 1983. A plant DNA minipreparation: version II. Plant Molecular Biology Reporter 1: 19-21.
9. Díaz, M., D. Fajardo, J. Moreno, C. García y V. Núñez. 2003. Identificación de genes R1 y R2 que confieren resistencia a Phytophthora infestans en genotipos colombianos de papa. Rev. Col. Biotecnol. 5: 40-50.
10. Fisher, M., D. Henk, C. Briggs, J. Brownstein, L. Madoff y S. McCraw. 2012. Emerging fungal threats to animal, plant and ecosystem health. Nature 484: 186-194.
11. Foolad, M. y D. Panthee. 2012. Marker-assissted selection in tomato breeding. Crit. Rev. Plant Sci. 31: 93-123
12. Gabriel, J., S. Veramendi, L. Pinto, Pariente, L. y A. Angulo. 2016. Asociaciones de marcadores moleculares con la resistencia a enfermedades, caracteres morfológicos y agronómicos en familias diploides de papa (Solanum tuberosum L.). Rev. Col. Biotecnol. 18: 17-32.
13. Gebhardt, C., A. Ballvora, B. Walkemeier, Oberhagemann, P. y K. Schüler. 2004. Assessing genetic potential in germplasm collections of crop plants by marker-trait association: a case study for potatoes with quantitative variation of resistance late blight and maturity type. Mol. Breed. 13: 93-102.
14. Jiang, R., J. Li, Z. Tian, J. Du, M. Armstrong, K. Baker et al. 2018. Potato late blight field resistance from QTL dPI09cis conferred by the NB NB-LRR gene R8. J. Exp. Bot. 69: 1545-1555.
15. Haverkort, A. y A. Verhagen. 2008. Climate change and its repercussions for the potato supply chain. Potato Research 51: 223.
16. Juyó, D., H. Genera y T. Mosquera. 2011. Evaluación de marcadores moleculares asociados con resistencia a gota (Phytophthora infestans L.) en papas diploides y tetraploides. Rev. Col. Biotecnol. 13: 51-62.
17. MAPRE. (Ministerio Administrativo de la Presidencia) 2018. https://mapre.gob.do/ ministerios-republica-dominicana/agricultura/ (consulta del 09/08/2018).
18. Mosquera, T., C. Fernández, L. Martínez, Acuña, A. y D. Cuéllar. 2008. Genética de la resistencia de la papa (Solanum tuberosum) a patógenos. Agronomía Colombiana 26: 7-15.
19. Murashige T. y F. Skoog. 1962. A revised medium for rapid growth and bioassay with tobacco tissue cultures. Physiologia Plantarum 15: 473-494.
20. Nelson, G., M. Rosegrant, A. Palazzo, I. Gray, C. Ingersoll, R. Robertson et al. 2010. Food security, farming, and climate change to 2050: Scenarios, results, policy options. IFPRI Research Monograph. doi: 10.2499/9780896291867.
21. Randall, E., V. Young, H. Sierotzki, G. Scalliet, R. Birch, E. Cooke et al. 2014. Sequence diversity in the large subunit of RNA polymerase I contributes to Mefenoxam insensitivity in Phytophthora infestans. Molecular Plant Pathology 15: 664-676.
22. Rodewald J. y B. Trognitz. 2013. Solanum resistance genes against Phytophthora infestans and their corresponding avirulence genes. Molecular Plant Pathology 14: 740-757.
23. Rodríguez, R. y M. Santos. 2002. Experiencias en la multiplicación de semilla de papa a partir de vitro plántulas. Instituto Dominicano de Investigaciones Agropecuarias y Forestales (IDIAF). Boletín Técnico del Programa Nacional de Raíces y Tubérculos (PR&T) y Programa Regional Cooperativo de Papa (Precodepa). 6 p.
24. Tan, M., R. Hutten, R. Visser y H. van Eck. 2010. The effect of pyramiding Phytophthora infestans resistance genes R Pi-mcd1 and R Pi-ber in potato. Theor. Appl. Gen. 121: 117-125.
25. Visser, R., C. Bachem, J. de Boer, G. Bryan, S. Chakrabarti, R. Feingold et al. 2009. Sequencing the potato genome: Outline and first results to come from the elucidation of the sequence of the world’s third most important food crop. Amer. J. Potato Res. 86: 417-429.
26. Vleeshouwers, V., S. Raffaele, J. Vossen, N. Champouret, R. Oliva, M. Segretin et al. 2011. Understanding and exploiting late blight resistance in the age of effectors. Ann. Rev. Phytopathology 49: 507-531.

Published

2020-04-01

How to Cite

Atharva V., R., Pérez-Almeida, I., Mejía, J., Delmonte, G., & Hodai, I. (2020). Molecular assessment of potato varieties resistance to Phytophthora infestans in the Dominican Republic. Bioagro, 31(2), 103-112. Retrieved from https://revistas.uclave.org/index.php/bioagro/article/view/2631

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